PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn034581
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 311aa    MW: 33821.7 Da    PI: 8.7875
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn034581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94e-121464146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w++
       Achn034581 14 KQKWTSEEEAALKAGVTKYGAGKWSTILKDPEfsillYSRSNVDLKDKWRN 64
                     79************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.201970IPR017930Myb domain
SuperFamilySSF466898.97E-161168IPR009057Homeodomain-like
SMARTSM007179.2E-71368IPR001005SANT/Myb domain
PfamPF002497.9E-81465IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-141465IPR009057Homeodomain-like
CDDcd116609.51E-201566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MRVIFGLLLM GAPKQKWTSE EEAALKAGVT KYGAGKWSTI LKDPEFSILL YSRSNVDLKD  60
KWRNMNVAAN GWGSRSRVRV TPKSNQQIVK DDDKALITVS QSDTEIVDAQ PLAVSNGTPE  120
NASSKKSIPS LFLDLLASPT GCIRLSSIEN SPNNLRQHPI LSSMRERYLA PENLEKLLAA  180
TLKLLTENGK LIKVKHQFRI APPSTHTDVN KGSSPLILEG KQKNSPKVEK NEIKILSKSQ  240
IDAELEKMKG MTAQEAAAAA AQAVAEAEAA IAEAEEAARE AEKAEAEAEE AQLFAEAAMK  300
ALKCRTVCTW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786348.18e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009786349.18e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009786350.18e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009786351.18e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009786352.18e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506260.17e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506327.17e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506387.17e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506453.17e-79PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506515.17e-79PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK46e-58TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A068U2436e-80A0A068U243_COFCA; Uncharacterized protein
STRINGSolyc02g064630.2.12e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-51telomere repeat binding factor 1